Variant report

Variant	rs12370639
Chromosome Location	chr12:87705834-87705835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11104392	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12366472	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17376835	1.00[AFR][1000 genomes]
rs73197892	1.00[AFR][1000 genomes]
rs73198256	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87703200-87706200	Enhancers	Primary B cells from peripheral blood	blood
2	chr12:87703600-87706000	Enhancers	Primary hematopoietic stem cells	blood
3	chr12:87703800-87706000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:87704200-87706000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr12:87704200-87706000	Enhancers	Fetal Kidney	kidney
6	chr12:87704600-87706000	Enhancers	GM12878-XiMat	blood
7	chr12:87705200-87706000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:87705800-87711000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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