Variant report

Variant	rs12371805
Chromosome Location	chr12:57669972-57669973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11172139	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57638800-57673600	Weak transcription	Stomach Mucosa	stomach
2	chr12:57652000-57673600	Weak transcription	Hela-S3	cervix
3	chr12:57653400-57671400	Weak transcription	Small Intestine	intestine
4	chr12:57654800-57705400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:57655800-57674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:57656200-57673800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:57656600-57682800	Weak transcription	Fetal Brain Male	brain
8	chr12:57658200-57673600	Strong transcription	Fetal Thymus	thymus
9	chr12:57660600-57674200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr12:57662800-57674200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:57662800-57706000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr12:57663000-57674000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr12:57663400-57671800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr12:57663800-57671400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr12:57663800-57671600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr12:57663800-57671800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr12:57663800-57673400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr12:57663800-57673400	Weak transcription	Brain Substantia Nigra	brain
19	chr12:57663800-57673600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr12:57663800-57675600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr12:57664000-57670800	Weak transcription	A549	lung
22	chr12:57664000-57670800	Weak transcription	GM12878-XiMat	blood
23	chr12:57664000-57671200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr12:57664000-57671600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:57664000-57671800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr12:57664000-57672000	Weak transcription	Colonic Mucosa	Colon
27	chr12:57664000-57673400	Weak transcription	NH-A	brain
28	chr12:57664000-57674000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr12:57664400-57670600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr12:57665200-57673400	Weak transcription	NHEK	skin
31	chr12:57665400-57674000	Weak transcription	Pancreas	Pancrea
32	chr12:57665600-57673400	Weak transcription	Fetal Lung	lung
33	chr12:57666200-57672000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr12:57667000-57670800	Weak transcription	Ovary	ovary
35	chr12:57667000-57671000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr12:57667000-57671000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr12:57667000-57671000	Weak transcription	Lung	lung
38	chr12:57667000-57671400	Weak transcription	Brain Angular Gyrus	brain
39	chr12:57667000-57671600	Weak transcription	Left Ventricle	heart
40	chr12:57667000-57671600	Weak transcription	K562	blood
41	chr12:57667000-57672200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr12:57667000-57674000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr12:57667000-57674000	Weak transcription	Right Ventricle	heart
44	chr12:57667200-57672000	Weak transcription	HMEC	breast
45	chr12:57667200-57672600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr12:57667200-57673400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr12:57667400-57670000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr12:57667400-57671200	Weak transcription	Fetal Brain Female	brain
49	chr12:57667400-57671600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr12:57667400-57671600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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