Variant report

Variant	rs12372656
Chromosome Location	chr12:8942268-8942269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2377585	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8941000-8942800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:8941000-8943000	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr12:8941000-8943200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:8941000-8943200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:8941000-8943200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:8941000-8943400	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr12:8941000-8943400	Active TSS	H1 Cell Line	embryonic stem cell
8	chr12:8941000-8943400	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr12:8941000-8943400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr12:8941000-8944400	Active TSS	H9 Cell Line	embryonic stem cell
11	chr12:8941000-8944400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:8941000-8944800	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr12:8941200-8942400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:8941200-8942800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr12:8941200-8943000	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr12:8941200-8943200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:8941200-8943400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr12:8941200-8943400	Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr12:8942000-8942600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr12:8942200-8942400	Enhancers	Primary T cells fromperipheralblood	blood
21	chr12:8942200-8942600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr12:8942200-8942800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr12:8942200-8944000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links