Variant report

Variant	rs12374386
Chromosome Location	chr4:172755479-172755480
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11132917	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs11722459	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs12499968	0.80[ASN][1000 genomes]
rs12508684	0.89[ASN][1000 genomes]
rs13105500	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34220549	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4602464	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs4692903	0.83[JPT][hapmap]
rs556586	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs57258782	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs580091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6849938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3448674	chr4:172755099-172755529	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv968022	chr4:172755106-172759928	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3343193	chr4:172755128-172755658	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172755400-172755800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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