Variant report

Variant	rs12374669
Chromosome Location	chr6:28733419-28733420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28731767..28734753-chr6:28735144..28738101,4	K562	blood:
2	chr6:28720936..28723199-chr6:28731913..28733640,2	K562	blood:
3	chr6:28731867..28735071-chr6:28750775..28753093,3	K562	blood:
4	chr6:28686780..28689583-chr6:28731850..28734136,2	K562	blood:
5	chr6:28731785..28733596-chr6:28736349..28738667,2	K562	blood:

Variant related genes	Relation type
ENSG00000235559	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11753996	1.00[ASN][1000 genomes]
rs12210625	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28731400-28733800	Active TSS	A549	lung
2	chr6:28731800-28734400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:28732000-28734600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
4	chr6:28732800-28733600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:28732800-28734200	Weak transcription	K562	blood
6	chr6:28732800-28734400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
7	chr6:28733000-28733600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:28733000-28733600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:28733000-28734000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:28733200-28733600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:28733200-28733600	Bivalent/Poised TSS	HSMM	muscle
12	chr6:28733200-28733800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
13	chr6:28733200-28733800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:28733200-28733800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
15	chr6:28733400-28733600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:28733400-28733600	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
17	chr6:28733400-28733600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:28733400-28733600	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:28733400-28733600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:28733400-28733600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
21	chr6:28733400-28733600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:28733400-28733600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:28733400-28733600	Bivalent Enhancer	Brain Germinal Matrix	brain
24	chr6:28733400-28733600	Bivalent Enhancer	Brain Hippocampus Middle	brain
25	chr6:28733400-28733600	Bivalent Enhancer	Esophagus	oesophagus
26	chr6:28733400-28733600	Bivalent Enhancer	Fetal Brain Female	brain
27	chr6:28733400-28733600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr6:28733400-28733600	Bivalent Enhancer	Fetal Muscle Leg	muscle
29	chr6:28733400-28733600	Bivalent Enhancer	Lung	lung
30	chr6:28733400-28733600	Bivalent Enhancer	Right Atrium	heart
31	chr6:28733400-28733600	Flanking Bivalent TSS/Enh	HMEC	breast
32	chr6:28733400-28733600	Flanking Bivalent TSS/Enh	NHEK	skin
33	chr6:28733400-28733600	Bivalent Enhancer	Osteobl	bone
34	chr6:28733400-28733800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
35	chr6:28733400-28733800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
36	chr6:28733400-28733800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
37	chr6:28733400-28733800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:28733400-28733800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
39	chr6:28733400-28733800	Flanking Bivalent TSS/Enh	Placenta	Placenta
40	chr6:28733400-28734000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
41	chr6:28733400-28734400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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