Variant report

Variant	rs12375912
Chromosome Location	chr9:100531321-100531322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100529991..100532148-chr9:100565472..100567018,2	MCF-7	breast:
2	chr9:100524684..100526185-chr9:100530606..100532510,2	MCF-7	breast:
3	chr9:100530381..100532814-chr9:100532881..100535803,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10984467	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100526600-100533200	Weak transcription	Fetal Intestine Small	intestine
2	chr9:100528000-100531400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:100528200-100532400	Enhancers	NHDF-Ad	bronchial
4	chr9:100529000-100531400	Weak transcription	Esophagus	oesophagus
5	chr9:100529200-100531400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:100529400-100531400	Weak transcription	NHLF	lung
7	chr9:100530200-100531400	Enhancers	Osteobl	bone
8	chr9:100530400-100531600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
9	chr9:100530400-100532200	Enhancers	Hela-S3	cervix
10	chr9:100530800-100531600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:100530800-100531800	Enhancers	NH-A	brain
12	chr9:100530800-100532000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:100530800-100532200	Enhancers	Adipose Nuclei	Adipose
14	chr9:100530800-100532200	Enhancers	HMEC	breast
15	chr9:100530800-100532200	Enhancers	HSMMtube	muscle
16	chr9:100531000-100531600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:100531000-100531600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:100531000-100531800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr9:100531000-100531800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:100531000-100532000	Enhancers	HSMM	muscle
21	chr9:100531000-100532200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr9:100531000-100532200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:100531200-100531400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:100531200-100531600	Flanking Active TSS	NHEK	skin
25	chr9:100531200-100531800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:100531200-100532200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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