Variant report

Variant	rs12376567
Chromosome Location	chr14:34945640-34945641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:34945242..34947731-chr14:34948944..34951768,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10761401	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10761402	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10821544	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10821551	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10821552	0.83[AMR][1000 genomes]
rs10821554	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10821555	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10821556	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10993905	0.80[AMR][1000 genomes]
rs10993906	0.80[AMR][1000 genomes]
rs10993907	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10993908	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10993909	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10993912	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10993914	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10993918	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11792729	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11794274	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11795074	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11795075	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12348775	0.83[ASN][1000 genomes]
rs13298753	0.81[AMR][1000 genomes]
rs2078778	0.83[AMR][1000 genomes]
rs2078779	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6479637	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7021188	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7024091	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7027500	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7027509	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7042991	0.83[ASN][1000 genomes]
rs736903	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9657703	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9657704	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1051104	chr14:34592378-35007083	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv949738	chr14:34616331-34990688	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv564192	chr14:34725233-34996507	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv564193	chr14:34728127-35000188	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv528989	chr14:34744426-34998705	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1054949	chr14:34834260-34992049	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv542025	chr14:34834260-34992049	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv1050218	chr14:34851521-34969433	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	nsv1048369	chr14:34886956-34974774	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
11	nsv901600	chr14:34895977-35010041	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
12	nsv1037857	chr14:34943388-35007724	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
13	nsv542026	chr14:34943388-35007724	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:34945600-34950400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:34945600-34952600	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links