Variant report

Variant	rs12378024
Chromosome Location	chr9:73482440-73482441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10511989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415221	0.94[ASW][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.85[LWK][hapmap];0.84[MEX][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2210938	0.86[ASN][1000 genomes]
rs4527946	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6560168	0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs12378024	TMEM2	cis	parietal	SCAN
rs12378024	FAM122A	cis	cerebellum	SCAN
rs12378024	SMC5	cis	cerebellum	SCAN
rs12378024	PGM5	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
2	chr9:73457200-73485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:73466200-73483000	Weak transcription	Fetal Heart	heart
4	chr9:73478000-73483400	Weak transcription	Ovary	ovary
5	chr9:73481000-73483800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:73481800-73484400	Active TSS	Fetal Kidney	kidney
7	chr9:73482200-73482600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:73482200-73482600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr9:73482200-73484400	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr9:73482200-73484400	Active TSS	Muscle Satellite Cultured Cells	--
11	chr9:73482400-73484200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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