Variant report

Variant	rs1238625
Chromosome Location	chr6:102166481-102166482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10485274	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1222957	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17062352	1.00[CEU][hapmap]
rs17062365	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs17062368	1.00[EUR][1000 genomes]
rs17336150	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56655044	1.00[EUR][1000 genomes]
rs60064652	1.00[EUR][1000 genomes]
rs6900995	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6929654	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73510670	1.00[EUR][1000 genomes]
rs73510681	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016167	chr6:102152010-102198914	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102155200-102170600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:102164600-102167200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:102164800-102168000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:102165000-102167600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:102165400-102168600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:102165600-102167200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:102165600-102168000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:102166200-102167800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:102166400-102166800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:102166400-102166800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:102166400-102167200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr6:102166400-102167400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:102166400-102167600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:102166400-102167800	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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