Variant report

Variant	rs12387996
Chromosome Location	chrX:109637212-109637213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10126143	1.00[CEU][hapmap]
rs12389230	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12389753	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12392782	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12394312	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16985968	1.00[CEU][hapmap]
rs17003968	1.00[CEU][hapmap]
rs2209182	1.00[CEU][hapmap]
rs2209183	1.00[CEU][hapmap]
rs5985278	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5985461	1.00[CEU][hapmap]
rs5985462	1.00[CEU][hapmap]
rs5985466	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs5985467	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2758583	chrX:109581771-109711481	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758884	chrX:109581771-109711481	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv438150	chrX:109635217-109640055	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109626400-109638000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chrX:109635000-109638200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chrX:109636000-109642200	Enhancers	K562	blood
4	chrX:109636400-109637800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chrX:109636400-109637800	Weak transcription	HSMMtube	muscle
6	chrX:109637200-109637600	Weak transcription	Ovary	ovary
7	chrX:109637200-109638400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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