Variant report

Variant	rs12392468
Chromosome Location	chrX:77931761-77931762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:35)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:35 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:133457468..133458993-chrX:77930323..77931842,3	K562	blood:
2	chr3:73158602..73162090-chrX:77930319..77931843,9	K562	blood:
3	chr17:41398809..41403842-chrX:77930319..77933342,10	MCF-7	breast:
4	chr6:142366299..142366821-chrX:77931323..77931843,2	Hela-S3	cervix:
5	chr4:159755016..159756536-chrX:77930322..77931843,2	K562	blood:
6	chr11:62609155..62610721-chrX:77930343..77933319,2	K562	blood:
7	chr6:142366297..142366801-chrX:77931321..77931822,2	MCF-7	breast:
8	chr11:62607628..62609202-chrX:77930320..77933340,4	MCF-7	breast:
9	chr19:49942464..49943982-chrX:77930320..77931841,2	K562	blood:
10	chr20:51476079..51476599-chrX:77931319..77931843,2	HCT-116	colon:
11	chr17:41398722..41402541-chrX:77930322..77933342,12	K562	blood:
12	chr17:41463347..41466392-chrX:77930320..77931839,3	MCF-7	breast:
13	chr17:41462164..41468239-chrX:77930323..77933342,17	K562	blood:
14	chr17:41561027..41564422-chrX:77930319..77933320,3	K562	blood:
15	chr6:142364797..142367795-chrX:77930320..77931841,2	K562	blood:
16	chr19:49942462..49943984-chrX:77930319..77931841,4	K562	blood:
17	chr17:41380127..41383584-chrX:77930339..77933342,6	K562	blood:
18	chr13:90583692..90586688-chrX:77930321..77933319,2	K562	blood:
19	chr4:103259213..103262193-chrX:77930319..77931822,3	K562	blood:
20	chr17:41398905..41402325-chrX:77930322..77933339,8	K562	blood:
21	chr19:49943464..49943984-chrX:77931321..77931843,3	Hela-S3	cervix:
22	chr11:62607618..62609220-chrX:77930319..77931843,4	MCF-7	breast:
23	chr11:62608629..62609217-chrX:77931319..77931841,2	NB4	blood:
24	chr17:41463853..41465371-chrX:77930319..77931842,2	K562	blood:
25	chr17:41463457..41467189-chrX:77930321..77933342,6	MCF-7	breast:
26	chr11:62607637..62609222-chrX:77930319..77931823,3	K562	blood:
27	chr6:142366316..142367825-chrX:77930343..77931843,2	K562	blood:
28	chr4:103260693..103262212-chrX:77930319..77931843,2	K562	blood:
29	chr17:41466185..41468150-chrX:77930341..77933340,3	K562	blood:
30	chr11:62608635..62609203-chrX:77931321..77931843,3	MCF-7	breast:
31	chr3:73159068..73162072-chrX:77930319..77931843,8	K562	blood:
32	chr17:41391885..41394276-chrX:77930320..77933320,4	K562	blood:
33	chr17:41391524..41394276-chrX:77930321..77933340,3	K562	blood:
34	chr11:62608638..62609150-chrX:77931319..77931823,3	HCT-116	colon:
35	chr17:41380127..41383707-chrX:77930323..77933342,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000188825	Chromatin interaction
ENSG00000236383	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000067596	Chromatin interaction
ENSG00000223247	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12395772	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17317336	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv521599	chrX:77662439-78124078	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv528728	chrX:77662439-78124078	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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