Variant report

Variant	rs12401456
Chromosome Location	chr1:150204405-150204406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150189218..150190851-chr1:150202612..150205022,2	K562	blood:
2	chr1:150203436..150211066-chr1:150333611..150339492,20	K562	blood:
3	chr1:150204090..150209498-chr1:150239337..150243073,9	K562	blood:
4	chr1:150196400..150199803-chr1:150204196..150206419,3	K562	blood:
5	chr1:150198495..150205043-chr1:150206226..150211170,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222222	Chromatin interaction
ENSG00000163125	Chromatin interaction
ENSG00000143401	Chromatin interaction
ENSG00000117362	Chromatin interaction
ENSG00000118292	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12403795	0.86[AFR][1000 genomes]
rs17648533	0.83[AFR][1000 genomes]
rs17648797	0.83[AFR][1000 genomes]
rs35249393	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150184200-150206600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:150186200-150206800	Weak transcription	Spleen	Spleen
3	chr1:150186400-150206000	Weak transcription	Colonic Mucosa	Colon
4	chr1:150186400-150206800	Weak transcription	Esophagus	oesophagus
5	chr1:150186600-150205200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:150186600-150205800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:150186600-150205800	Weak transcription	Right Atrium	heart
8	chr1:150186600-150206000	Weak transcription	Fetal Brain Male	brain
9	chr1:150186600-150206200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:150186600-150206200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:150186600-150206400	Weak transcription	Aorta	Aorta
12	chr1:150186800-150205800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr1:150186800-150205800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:150186800-150205800	Weak transcription	Brain Germinal Matrix	brain
15	chr1:150186800-150205800	Weak transcription	Brain Substantia Nigra	brain
16	chr1:150186800-150206800	Weak transcription	Pancreas	Pancrea
17	chr1:150189000-150204600	Strong transcription	Dnd41	blood
18	chr1:150191600-150205400	Weak transcription	Small Intestine	intestine
19	chr1:150191800-150205000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:150192800-150206800	Weak transcription	Gastric	stomach
21	chr1:150194400-150205000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:150197600-150205200	Weak transcription	Fetal Heart	heart
23	chr1:150197800-150205800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr1:150198200-150206600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:150198600-150205400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:150198800-150205000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr1:150198800-150205800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr1:150198800-150205800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr1:150198800-150206200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:150199000-150205800	Weak transcription	Fetal Brain Female	brain
31	chr1:150199200-150205200	Weak transcription	Brain Hippocampus Middle	brain
32	chr1:150199200-150205600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr1:150199200-150205800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr1:150199200-150205800	Weak transcription	Colon Smooth Muscle	Colon
35	chr1:150199200-150205800	Weak transcription	Right Ventricle	heart
36	chr1:150199200-150205800	Weak transcription	HSMMtube	muscle
37	chr1:150199200-150206000	Weak transcription	Brain Angular Gyrus	brain
38	chr1:150199200-150206400	Weak transcription	Ovary	ovary
39	chr1:150199400-150205800	Weak transcription	Psoas Muscle	Psoas
40	chr1:150199400-150205800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr1:150199400-150206200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr1:150199800-150205800	Weak transcription	Brain Anterior Caudate	brain
43	chr1:150200000-150205400	Weak transcription	Fetal Lung	lung
44	chr1:150200000-150205600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr1:150200000-150205600	Weak transcription	Fetal Intestine Large	intestine
46	chr1:150200000-150205600	Weak transcription	NHEK	skin
47	chr1:150200000-150205800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr1:150200000-150205800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr1:150200000-150205800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr1:150200000-150205800	Weak transcription	Brain Cingulate Gyrus	brain

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