Variant report

Variant	rs12403835
Chromosome Location	chr1:165902682-165902683
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10918312	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2001664	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61269003	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872509	chr1:165885147-165917109	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165902400-165903600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr1:165902400-165903800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr1:165902400-165903800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:165902400-165903800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:165902400-165904000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:165902600-165903000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:165902600-165903600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:165902600-165903600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr1:165902600-165903600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:165902600-165903800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:165902600-165904000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr1:165902600-165904400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links