Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489623	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12401558	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12406202	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1329449	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1885002	0.82[ASN][1000 genomes]
rs1887977	0.82[ASN][1000 genomes]
rs2269115	0.82[ASN][1000 genomes]
rs2269118	0.81[ASN][1000 genomes]
rs2269119	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2269121	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2300954	0.81[ASN][1000 genomes]
rs2300955	0.81[ASN][1000 genomes]
rs55894323	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57210737	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6681119	0.82[ASN][1000 genomes]
rs6694643	0.82[ASN][1000 genomes]
rs6697228	0.82[ASN][1000 genomes]
rs72670317	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72670319	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs857040	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1000266	chr1:57291371-57319480	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57310600-57315200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:57310800-57315200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:57311000-57315000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:57311000-57315600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:57311200-57315800	Weak transcription	Fetal Brain Female	brain
6	chr1:57311600-57315600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:57311600-57315800	Weak transcription	HepG2	liver
8	chr1:57313400-57313600	Enhancers	Spleen	Spleen

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