Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802047	0.82[EUR][1000 genomes]
rs17009642	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17009643	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17009664	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35316503	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35768495	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4846689	1.00[ASN][1000 genomes]
rs4846693	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4846695	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4846696	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4846697	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4846700	0.82[EUR][1000 genomes]
rs56704721	0.82[EUR][1000 genomes]
rs59293137	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59638807	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6541180	0.85[ASN][1000 genomes]
rs6664595	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9431432	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9431436	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221375200-221375600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr1:221375400-221377200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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