Variant report

Variant	rs12412661
Chromosome Location	chr10:112784182-112784183
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112778849..112781525-chr10:112783454..112785651,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10787298	0.95[EUR][1000 genomes]
rs1327553	0.95[EUR][1000 genomes]
rs1410055	0.93[EUR][1000 genomes]
rs1887460	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs1980869	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs553668	0.86[CHB][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap];0.81[ASN][1000 genomes]
rs7085088	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7090695	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7895872	0.83[CHB][hapmap]
rs7899762	0.81[ASN][1000 genomes]
rs990429	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1048444	chr10:112724159-112795159	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1051595	chr10:112730022-112789048	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112705200-112789800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:112707200-112784200	Weak transcription	Left Ventricle	heart
3	chr10:112732600-112789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:112732800-112789400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:112738200-112784600	Weak transcription	Ovary	ovary
6	chr10:112740400-112791800	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:112747600-112785200	Weak transcription	Fetal Brain Female	brain
8	chr10:112749200-112789400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:112750400-112785000	Weak transcription	A549	lung
10	chr10:112753200-112784200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:112753400-112789600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:112754000-112784800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:112761800-112784200	Weak transcription	Spleen	Spleen
14	chr10:112765000-112794200	Weak transcription	NH-A	brain
15	chr10:112765000-112794400	Weak transcription	NHLF	lung
16	chr10:112765200-112794200	Weak transcription	NHEK	skin
17	chr10:112769800-112785600	Weak transcription	HUVEC	blood vessel
18	chr10:112770800-112798800	Weak transcription	HMEC	breast
19	chr10:112771600-112784400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:112772800-112789200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:112773000-112793200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:112773000-112794000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr10:112778000-112784400	Weak transcription	Placenta	Placenta
24	chr10:112778600-112789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:112781000-112794200	Weak transcription	HSMM	muscle
26	chr10:112781400-112788400	Weak transcription	GM12878-XiMat	blood
27	chr10:112781600-112784600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:112782400-112789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:112783000-112784600	Weak transcription	Fetal Intestine Large	intestine
30	chr10:112783000-112784600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr10:112783000-112785200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr10:112783000-112789200	Weak transcription	Fetal Thymus	thymus
33	chr10:112783000-112789400	Weak transcription	Aorta	Aorta
34	chr10:112783000-112789800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr10:112783000-112792600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:112783000-112794200	Weak transcription	Osteobl	bone
37	chr10:112783000-112794400	Weak transcription	HSMMtube	muscle
38	chr10:112783200-112785800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:112783200-112788200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:112783200-112788800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr10:112783200-112789400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:112783200-112789600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:112783200-112791600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:112783200-112791800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:112783400-112789200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:112783400-112789200	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr10:112783400-112789400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr10:112783400-112801400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:112783600-112790000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:112783600-112794200	Weak transcription	NHDF-Ad	bronchial

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