Variant report

Variant	rs12413168
Chromosome Location	chr10:18276809-18276810
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10508555	0.88[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11011919	0.81[EUR][1000 genomes]
rs11594776	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs12782151	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs17658805	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs2148595	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2148596	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs2182582	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs35540736	0.81[EUR][1000 genomes]
rs7071264	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7099037	0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs7922102	0.84[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18273400-18278400	Weak transcription	NHDF-Ad	bronchial
2	chr10:18273600-18278800	Weak transcription	NHEK	skin
3	chr10:18273600-18279000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:18273600-18279000	Weak transcription	Osteobl	bone
5	chr10:18273600-18282000	Weak transcription	Hela-S3	cervix
6	chr10:18273800-18278800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18276400-18277000	Weak transcription	NHLF	lung
8	chr10:18276400-18280200	Enhancers	GM12878-XiMat	blood
9	chr10:18276600-18277800	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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