Variant report
| Variant | rs12415100 |
|---|---|
| Chromosome Location | chr10:59273765-59273766 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:59273221..59275068-chr10:59277123..59280013,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10740709 | 0.99[ASN][1000 genomes] |
| rs10763489 | 0.99[ASN][1000 genomes] |
| rs10763490 | 0.99[ASN][1000 genomes] |
| rs10826053 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10826054 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10826055 | 0.99[ASN][1000 genomes] |
| rs10826056 | 0.99[ASN][1000 genomes] |
| rs10826058 | 0.93[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs11005813 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11005815 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12146253 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2393278 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2393348 | 0.81[ASN][1000 genomes] |
| rs2393349 | 0.87[ASN][1000 genomes] |
| rs2393350 | 0.99[ASN][1000 genomes] |
| rs2393352 | 0.93[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2393353 | 0.99[ASN][1000 genomes] |
| rs2893755 | 0.99[ASN][1000 genomes] |
| rs4387278 | 0.99[ASN][1000 genomes] |
| rs4387279 | 0.99[ASN][1000 genomes] |
| rs61847423 | 0.81[ASN][1000 genomes] |
| rs7081514 | 0.98[ASN][1000 genomes] |
| rs7085147 | 0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895544 | chr10:58938552-59282980 | Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv895545 | chr10:58938552-59313872 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054968 | chr10:59165968-59426800 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv467288 | chr10:59189178-59394044 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv551122 | chr10:59189178-59394044 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv1053689 | chr10:59200246-59366941 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv540653 | chr10:59200246-59366941 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv895550 | chr10:59217371-59537773 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 9 | nsv1052321 | chr10:59262857-59352442 | ZNF genes & repeats Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 10 | nsv1043592 | chr10:59262857-59352758 | ZNF genes & repeats Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 11 | nsv895551 | chr10:59272564-59363195 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:59273600-59273800 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
