Variant report

Variant	rs12415837
Chromosome Location	chr10:99478230-99478231
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99477505..99481349-chr10:99484055..99486700,3	MCF-7	breast:
2	chr10:99443080..99453237-chr10:99471420..99478243,12	MCF-7	breast:
3	chr10:99444102..99447131-chr10:99475724..99478855,3	MCF-7	breast:
4	chr10:99477514..99480441-chr10:99495281..99497954,2	MCF-7	breast:
5	chr10:99476839..99480454-chr10:99481730..99484335,3	K562	blood:
6	chr10:99476464..99480454-chr10:99480682..99484335,5	K562	blood:

Variant related genes	Relation type
ENSG00000119986	Chromatin interaction
ENSG00000155256	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv519864	chr10:99478081-99486644	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99473800-99479000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:99475000-99479400	Weak transcription	Fetal Kidney	kidney
3	chr10:99475800-99478800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:99475800-99479200	Genic enhancers	Colon Smooth Muscle	Colon
5	chr10:99476000-99478400	Weak transcription	HSMMtube	muscle
6	chr10:99476000-99478800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:99476000-99479600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:99476000-99479600	Genic enhancers	Fetal Muscle Leg	muscle
9	chr10:99476000-99479600	Genic enhancers	Fetal Stomach	stomach
10	chr10:99476200-99479200	Genic enhancers	NHLF	lung
11	chr10:99476200-99479600	Genic enhancers	Fetal Muscle Trunk	muscle
12	chr10:99476200-99486600	Weak transcription	Ovary	ovary
13	chr10:99476400-99478400	Strong transcription	Fetal Lung	lung
14	chr10:99476400-99478600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:99476400-99478600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:99476400-99479600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:99476600-99478400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:99476600-99478600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:99476600-99479000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:99476600-99479000	Genic enhancers	NHDF-Ad	bronchial
21	chr10:99476600-99479200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:99476600-99479600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:99476600-99479800	Strong transcription	Osteobl	bone
24	chr10:99476600-99486200	Weak transcription	HUVEC	blood vessel
25	chr10:99476800-99478400	Flanking Active TSS	Rectal Smooth Muscle	rectum
26	chr10:99477000-99478400	Strong transcription	Dnd41	blood
27	chr10:99477000-99479000	Genic enhancers	Muscle Satellite Cultured Cells	--
28	chr10:99477000-99479000	Enhancers	Left Ventricle	heart
29	chr10:99477000-99479200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:99477000-99479600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:99477000-99480400	Enhancers	Colonic Mucosa	Colon
32	chr10:99477200-99478600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr10:99477200-99479200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr10:99477200-99479600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:99477200-99479600	Enhancers	Stomach Mucosa	stomach
36	chr10:99477200-99479600	Enhancers	K562	blood
37	chr10:99477200-99486200	Weak transcription	NH-A	brain
38	chr10:99477400-99478400	Genic enhancers	Gastric	stomach
39	chr10:99477400-99478800	Genic enhancers	HUES6 Cell Line	embryonic stem cell
40	chr10:99477400-99478800	Flanking Active TSS	Hela-S3	cervix
41	chr10:99477400-99479000	Enhancers	Fetal Heart	heart
42	chr10:99477400-99479200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:99477400-99479600	Enhancers	Esophagus	oesophagus
44	chr10:99477400-99479600	Genic enhancers	Fetal Intestine Small	intestine
45	chr10:99477400-99480200	Enhancers	Duodenum Mucosa	Duodenum
46	chr10:99477600-99478400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:99477600-99478400	Enhancers	Brain Germinal Matrix	brain
48	chr10:99477600-99478400	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
49	chr10:99477600-99479000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:99477600-99479400	Enhancers	Lung	lung

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