Variant report

Variant	rs1241610
Chromosome Location	chr14:25361916-25361917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10483289	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1241584	1.00[ASN][1000 genomes]
rs1241585	1.00[ASN][1000 genomes]
rs1241586	1.00[ASN][1000 genomes]
rs1241587	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1241589	1.00[ASN][1000 genomes]
rs1241590	1.00[ASN][1000 genomes]
rs1241591	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1241592	1.00[ASN][1000 genomes]
rs1241593	1.00[ASN][1000 genomes]
rs1241595	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1241596	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1241597	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1241598	0.82[JPT][hapmap]
rs1241599	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1241600	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1241601	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1241602	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs1241603	1.00[ASN][1000 genomes]
rs1241604	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1241606	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1241607	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1241609	1.00[ASN][1000 genomes]
rs1241611	0.88[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.87[ASN][1000 genomes]
rs1241612	0.84[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap]
rs1241614	0.90[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs12879571	0.96[ASN][1000 genomes]
rs12879748	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12879796	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12880290	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12884685	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12888493	0.95[ASN][1000 genomes]
rs12888847	0.88[ASN][1000 genomes]
rs12888862	0.93[ASN][1000 genomes]
rs12888953	1.00[ASN][1000 genomes]
rs12889256	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12889353	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12894268	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12894469	1.00[ASN][1000 genomes]
rs12895085	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12895300	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8005503	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs854337	0.84[CEU][hapmap]
rs854338	0.84[CEU][hapmap]
rs996271	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25350600-25364600	Weak transcription	NHDF-Ad	bronchial
2	chr14:25351200-25363800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:25358200-25362400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:25358400-25369800	Weak transcription	HSMM	muscle
5	chr14:25359200-25369000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:25360400-25363800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:25360400-25364600	Weak transcription	Psoas Muscle	Psoas
8	chr14:25360600-25363600	Weak transcription	Fetal Intestine Small	intestine
9	chr14:25360600-25369200	Weak transcription	Fetal Lung	lung
10	chr14:25361000-25364200	Enhancers	HepG2	liver
11	chr14:25361600-25363000	Enhancers	Fetal Heart	heart
12	chr14:25361800-25362200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:25361800-25362200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:25361800-25362200	Enhancers	Brain Hippocampus Middle	brain
15	chr14:25361800-25362200	Enhancers	Fetal Muscle Trunk	muscle
16	chr14:25361800-25362200	Enhancers	Fetal Muscle Leg	muscle
17	chr14:25361800-25362400	Enhancers	Left Ventricle	heart
18	chr14:25361800-25362400	Enhancers	Lung	lung
19	chr14:25361800-25362400	Enhancers	Right Atrium	heart
20	chr14:25361800-25362400	Enhancers	Right Ventricle	heart
21	chr14:25361800-25362600	Enhancers	Brain Cingulate Gyrus	brain
22	chr14:25361800-25362800	Enhancers	Brain Anterior Caudate	brain
23	chr14:25361800-25362800	Enhancers	Pancreas	Pancrea

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