Variant report

Variant	rs1241635
Chromosome Location	chr14:25354756-25354757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1241605	0.91[JPT][hapmap]
rs1241608	0.91[JPT][hapmap]
rs1241615	0.91[JPT][hapmap]
rs1241616	0.91[JPT][hapmap]
rs1241617	0.91[JPT][hapmap]
rs1241618	0.91[JPT][hapmap]
rs1241619	0.91[JPT][hapmap]
rs1241620	0.91[JPT][hapmap]
rs1241621	0.91[JPT][hapmap]
rs1241622	0.91[JPT][hapmap]
rs1241625	0.91[JPT][hapmap]
rs1241627	0.90[JPT][hapmap]
rs1241629	0.91[JPT][hapmap]
rs1241631	0.91[JPT][hapmap]
rs1241632	0.91[JPT][hapmap]
rs1241633	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1241634	0.95[JPT][hapmap]
rs1241636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1241637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1241638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1241639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1312629	0.91[JPT][hapmap]
rs1312630	0.91[JPT][hapmap]
rs1312631	0.91[JPT][hapmap]
rs1312632	0.91[JPT][hapmap]
rs2332448	0.91[JPT][hapmap]
rs2332449	0.91[JPT][hapmap]
rs6574078	0.91[JPT][hapmap]
rs6574079	0.91[JPT][hapmap]
rs7143584	0.91[JPT][hapmap]
rs8017040	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1810592	chr14:25346636-25354756	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25346000-25358000	Weak transcription	Fetal Intestine Small	intestine
2	chr14:25349200-25361800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:25349800-25357000	Weak transcription	Right Ventricle	heart
4	chr14:25350600-25354800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:25350600-25364600	Weak transcription	NHDF-Ad	bronchial
6	chr14:25351000-25356800	Weak transcription	HSMM	muscle
7	chr14:25351200-25361600	Weak transcription	Fetal Heart	heart
8	chr14:25351200-25361800	Weak transcription	Right Atrium	heart
9	chr14:25351200-25363800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:25352600-25354800	Enhancers	Brain Anterior Caudate	brain
11	chr14:25353600-25357200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:25353600-25358600	Enhancers	HepG2	liver
13	chr14:25353800-25355400	Enhancers	Brain Angular Gyrus	brain
14	chr14:25353800-25355600	Enhancers	Brain Substantia Nigra	brain
15	chr14:25354000-25355200	Enhancers	Brain Hippocampus Middle	brain
16	chr14:25354200-25355200	Enhancers	Brain Cingulate Gyrus	brain
17	chr14:25354200-25355400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr14:25354200-25355400	Enhancers	Fetal Intestine Large	intestine
19	chr14:25354400-25354800	Enhancers	Left Ventricle	heart
20	chr14:25354400-25354800	Enhancers	Pancreas	Pancrea
21	chr14:25354600-25354800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:25354600-25355000	Enhancers	Gastric	stomach
23	chr14:25354600-25355200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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