Variant report

Variant	rs12416828
Chromosome Location	chr11:8058030-8058031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10839968	0.95[EUR][1000 genomes]
rs1950008	1.00[EUR][1000 genomes]
rs55721562	1.00[EUR][1000 genomes]
rs56775092	0.82[EUR][1000 genomes]
rs6578920	0.93[EUR][1000 genomes]
rs7112892	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv983216	chr11:8056182-8060154	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv972907	chr11:8057411-8061563	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8055200-8059600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:8055400-8059400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:8055400-8059600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:8055400-8059600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:8055800-8059600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:8055800-8060000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:8056200-8059400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:8056600-8059200	Weak transcription	Brain Anterior Caudate	brain
9	chr11:8056800-8061400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:8057000-8058200	Enhancers	Right Ventricle	heart
11	chr11:8057000-8059800	Weak transcription	Fetal Brain Female	brain
12	chr11:8057200-8059200	Weak transcription	Brain Germinal Matrix	brain
13	chr11:8057400-8058600	Weak transcription	Right Atrium	heart
14	chr11:8057600-8059400	Weak transcription	Fetal Brain Male	brain
15	chr11:8058000-8067400	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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