Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11020413	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11020415	0.84[ASN][1000 genomes]
rs12223863	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12417178	0.90[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2399676	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2399680	0.83[ASN][1000 genomes]
rs2399681	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2399682	0.84[ASN][1000 genomes]
rs2399683	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2399684	0.84[ASN][1000 genomes]
rs2399685	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs2895470	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2895472	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2895473	0.84[ASN][1000 genomes]
rs4753468	0.81[AMR][1000 genomes]
rs4753471	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60944979	0.82[ASN][1000 genomes]
rs7118364	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs7125151	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7126188	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7128507	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12416843	C11orf75	cis	multi-tissue	Pritchard

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93277200-93293000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:93283600-93291000	Weak transcription	Aorta	Aorta
3	chr11:93288200-93288600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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