Variant report

Variant	rs12419122
Chromosome Location	chr11:83556823-83556824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12363937	1.00[AFR][1000 genomes]
rs12418645	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1829148	1.00[AFR][1000 genomes]
rs34905738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7951794	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898017	chr11:83556067-83583324	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv898018	chr11:83556067-83586526	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv898019	chr11:83556067-83602367	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83549200-83557200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83550000-83564200	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83550200-83562200	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83550200-83564600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83556000-83557400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:83556000-83557600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:83556200-83557600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:83556400-83557800	Enhancers	HepG2	liver
9	chr11:83556600-83557400	Enhancers	Primary hematopoietic stem cells	blood
10	chr11:83556600-83557400	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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