Variant report

Variant	rs12419600
Chromosome Location	chr11:76394274-76394275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12422144	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1806527	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1047069	chr11:76367686-76420813	Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv1850014	chr11:76384895-76464814	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv39437	chr11:76388349-76396423	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76384400-76412800	Weak transcription	Right Atrium	heart
2	chr11:76390200-76397000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:76392000-76395400	Weak transcription	Spleen	Spleen
4	chr11:76392000-76396800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:76392000-76397400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:76392200-76394800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:76392200-76395200	Weak transcription	Placenta	Placenta
8	chr11:76392200-76397000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:76392200-76397000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr11:76392400-76396800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:76393000-76394800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:76393600-76396800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:76393800-76394400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
14	chr11:76393800-76395000	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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