Variant report

Variant	rs12423059
Chromosome Location	chr12:26401046-26401047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10505994	0.95[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs10771272	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12422927	0.98[ASN][1000 genomes]
rs12424263	0.80[AMR][1000 genomes]
rs12426603	0.98[ASN][1000 genomes]
rs1480039	1.00[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.98[ASN][1000 genomes]
rs16915737	0.98[ASN][1000 genomes]
rs16930376	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34623765	0.96[ASN][1000 genomes]
rs55965428	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73072448	0.98[ASN][1000 genomes]
rs7955904	0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs9214	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817432	chr12:26355515-26873664	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12423059	KRAS	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26394000-26404600	Weak transcription	Pancreas	Pancrea
2	chr12:26397800-26401200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr12:26399800-26402200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:26400400-26402200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:26400400-26402400	Weak transcription	NHEK	skin
6	chr12:26400800-26401200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:26400800-26401200	Active TSS	Osteobl	bone
8	chr12:26401000-26402200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:26401000-26404800	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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