Variant report

Variant	rs12424673
Chromosome Location	chr12:33101714-33101715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10844398	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052322	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12367772	0.81[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1392334	0.81[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1846637	0.86[CEU][hapmap]
rs2133676	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35308520	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4931659	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4931660	0.81[ASN][1000 genomes]
rs4931674	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4931677	0.81[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61927344	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33097400-33103000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:33100600-33102800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:33100600-33103600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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