Variant report

Variant	rs12425353
Chromosome Location	chr13:89167820-89167821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10128765	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10506937	0.87[ASN][1000 genomes]
rs10777013	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10858531	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10858533	0.84[ASN][1000 genomes]
rs11104186	0.88[ASN][1000 genomes]
rs11104200	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11104201	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11104202	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11104204	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11104206	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11104208	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11104210	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11104211	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11503302	0.81[AMR][1000 genomes]
rs12298287	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12298747	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12300511	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12304615	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12305874	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12311623	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12311807	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12313182	0.83[AMR][1000 genomes]
rs12422318	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12424503	0.88[ASN][1000 genomes]
rs12425336	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12425718	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12426364	0.81[ASN][1000 genomes]
rs12811281	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12813595	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12817472	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12824911	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12825152	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1387401	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1489344	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1489345	0.88[ASN][1000 genomes]
rs1586594	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1602028	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1602029	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1873153	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1873154	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1922750	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1922752	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1994537	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2018963	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2130175	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2406393	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2406396	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28811636	0.80[AMR][1000 genomes]
rs28869873	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34098787	0.82[ASN][1000 genomes]
rs35395565	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35531102	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4842542	0.81[AMR][1000 genomes]
rs66513214	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs66604050	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66612020	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs67375948	0.82[ASN][1000 genomes]
rs67983610	0.84[ASN][1000 genomes]
rs68073390	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs71452165	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73399861	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9804925	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9805065	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900810	chr13:88963676-89189142	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900814	chr13:89098616-89189142	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900815	chr13:89098616-89216190	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv870345	chr13:89164439-89295782	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89165000-89168000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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