Variant report

Variant	rs12425446
Chromosome Location	chr12:118039437-118039438
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11068568	0.93[EUR][1000 genomes]
rs12422920	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12425044	0.81[ASN][1000 genomes]
rs12425491	1.00[ASN][1000 genomes]
rs12425928	1.00[ASN][1000 genomes]
rs12426011	0.81[ASN][1000 genomes]
rs17510713	0.81[ASN][1000 genomes]
rs17510790	0.81[ASN][1000 genomes]
rs1875142	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2650170	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118031600-118041000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr12:118031600-118041400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:118035000-118041200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:118037200-118041200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:118037200-118044600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:118037600-118041200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:118037800-118041200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:118038400-118041000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:118038400-118045200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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