Variant report

Variant	rs12426085
Chromosome Location	chr12:1734046-1734047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:1732773..1734635-chr12:1736622..1739289,3	K562	blood:

Variant related genes	Relation type
ENSG00000111186	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16928611	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529398	chr12:941915-1741311	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042863	chr12:1163817-1902302	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv541345	chr12:1163817-1902302	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv898584	chr12:1607390-1783251	Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv826180	chr12:1614395-1759431	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv826181	chr12:1619798-1754941	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv898586	chr12:1690140-1734365	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv832304	chr12:1710249-1868642	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv898587	chr12:1732295-1756642	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:1715400-1738600	Weak transcription	Right Atrium	heart
2	chr12:1716200-1734600	Weak transcription	Fetal Stomach	stomach
3	chr12:1721000-1734400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr12:1721800-1734600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:1721800-1738600	Weak transcription	Fetal Brain Female	brain
6	chr12:1724000-1737600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:1724800-1734200	Weak transcription	HSMM	muscle
8	chr12:1725800-1735200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:1728200-1734400	Weak transcription	NH-A	brain
10	chr12:1729000-1734200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:1729200-1734200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:1729200-1734200	Weak transcription	Adipose Nuclei	Adipose
13	chr12:1729600-1734400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr12:1729600-1734400	Weak transcription	NHDF-Ad	bronchial
15	chr12:1730600-1734600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr12:1732200-1734400	Weak transcription	Fetal Muscle Leg	muscle
17	chr12:1732200-1738400	Weak transcription	Brain Anterior Caudate	brain
18	chr12:1732200-1738400	Weak transcription	Esophagus	oesophagus
19	chr12:1732400-1738000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:1733000-1734200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr12:1733000-1735400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr12:1733000-1744000	Weak transcription	K562	blood
23	chr12:1733800-1735200	Enhancers	Osteobl	bone
24	chr12:1733800-1735400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr12:1734000-1734400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr12:1734000-1734400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr12:1734000-1734600	Enhancers	H1 Cell Line	embryonic stem cell
28	chr12:1734000-1734600	Enhancers	H9 Cell Line	embryonic stem cell
29	chr12:1734000-1734600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr12:1734000-1734600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr12:1734000-1734600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr12:1734000-1734600	Enhancers	Colon Smooth Muscle	Colon
33	chr12:1734000-1734600	Genic enhancers	HSMMtube	muscle
34	chr12:1734000-1734800	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr12:1734000-1734800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
36	chr12:1734000-1734800	Enhancers	NHLF	lung
37	chr12:1734000-1735000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr12:1734000-1735000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr12:1734000-1735200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr12:1734000-1735200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr12:1734000-1735200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr12:1734000-1735200	Enhancers	Ovary	ovary
43	chr12:1734000-1735400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr12:1734000-1735400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links