Variant report

Variant	rs12426662
Chromosome Location	chr12:74546400-74546401
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:74545641..74548957-chr12:74555890..74557729,3	K562	blood:
2	chr12:74540805..74543327-chr12:74544789..74546497,2	K562	blood:
3	chr12:74545641..74548768-chr12:74554696..74557729,3	K562	blood:
4	chr12:74531548..74535089-chr12:74542302..74547555,5	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10506702	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11179983	0.87[ASN][1000 genomes]
rs11503767	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11833331	0.87[ASN][1000 genomes]
rs12321914	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs12422714	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12424820	0.96[ASN][1000 genomes]
rs12426361	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12426574	0.97[ASN][1000 genomes]
rs12426578	0.87[ASN][1000 genomes]
rs1357239	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17112965	0.86[CHB][hapmap];0.91[CHD][hapmap];0.94[MEX][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17113000	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17113126	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17113127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1820497	0.86[JPT][hapmap];1.00[TSI][hapmap]
rs1829128	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2177131	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2278189	0.86[JPT][hapmap]
rs35252300	0.97[ASN][1000 genomes]
rs4883504	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61074108	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66520626	0.97[ASN][1000 genomes]
rs66523151	0.97[ASN][1000 genomes]
rs66680188	0.97[ASN][1000 genomes]
rs66717840	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66815077	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66892526	0.93[ASN][1000 genomes]
rs66970376	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs67019004	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67050885	0.86[ASN][1000 genomes]
rs67108439	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs67121434	0.87[ASN][1000 genomes]
rs67355516	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs67364396	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs67467224	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67535600	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs67629091	0.86[ASN][1000 genomes]
rs67681266	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs67741049	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67893703	0.87[ASN][1000 genomes]
rs67981251	0.87[AMR][1000 genomes]
rs67986076	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs68046258	0.97[ASN][1000 genomes]
rs68068848	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs68121900	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs68165320	0.89[ASN][1000 genomes]
rs72652856	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72652862	0.87[ASN][1000 genomes]
rs7297189	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7297995	0.87[ASN][1000 genomes]
rs7307822	0.87[ASN][1000 genomes]
rs870104	0.87[ASN][1000 genomes]
rs939827	0.88[ASN][1000 genomes]
rs939828	0.87[ASN][1000 genomes]
rs9788023	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[ASN][1000 genomes]
rs9788180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037030	chr12:73898311-74656764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv541537	chr12:73898311-74656764	ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1039468	chr12:74080586-75000246	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	esv2755812	chr12:74110833-74557833	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv899283	chr12:74360978-74609860	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv559392	chr12:74456882-74565295	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv899284	chr12:74456882-74609860	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv899285	chr12:74456882-74651797	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv899286	chr12:74471340-74609860	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv470302	chr12:74505531-74592708	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv1043380	chr12:74507314-74635020	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	nsv899287	chr12:74509618-74609860	Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv899288	chr12:74509618-74651797	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv1821495	chr12:74517828-74647299	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv469470	chr12:74528830-74596252	Weak transcription Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
16	nsv559393	chr12:74528830-74596252	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
17	nsv559394	chr12:74528830-74609860	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	nsv899289	chr12:74528830-74609860	Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:74545600-74546600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:74545600-74547400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:74546000-74546400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr12:74546000-74546800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr12:74546000-74546800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:74546200-74546800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr12:74546200-74547000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr12:74546400-74546800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr12:74546400-74546800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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