Variant report

Variant	rs12426877
Chromosome Location	chr12:48950156-48950157
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11168541	1.00[JPT][hapmap]
rs1906717	0.82[JPT][hapmap]
rs2634685	0.82[JPT][hapmap]
rs2732458	0.82[JPT][hapmap]
rs7301176	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1047600	chr12:48927514-48954225	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1048307	chr12:48927514-48958949	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48949600-48950600	Enhancers	K562	blood
2	chr12:48949800-48950800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr12:48950000-48950400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:48950000-48950400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:48950000-48951200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:48950000-48951600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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