Variant report

Variant	rs12426902
Chromosome Location	chr12:122683239-122683240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1001178	0.93[ASN][1000 genomes]
rs11061368	0.80[EUR][1000 genomes]
rs11836373	0.80[EUR][1000 genomes]
rs12310939	0.93[ASN][1000 genomes]
rs28579554	0.93[ASN][1000 genomes]
rs35422129	0.80[EUR][1000 genomes]
rs60995900	0.80[EUR][1000 genomes]
rs61954363	0.80[EUR][1000 genomes]
rs61955586	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61955587	0.85[EUR][1000 genomes]
rs61955588	0.83[EUR][1000 genomes]
rs61955589	0.83[EUR][1000 genomes]
rs7294427	0.89[ASN][1000 genomes]
rs872494	0.93[ASN][1000 genomes]
rs9971771	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	nsv916686	chr12:122240149-122714056	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv1038827	chr12:122627371-122687913	Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122670000-122683600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:122674800-122685000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:122677800-122687400	Weak transcription	Right Atrium	heart
4	chr12:122681600-122683400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:122681800-122684600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:122682400-122683600	Enhancers	Osteobl	bone
7	chr12:122682600-122684400	Bivalent Enhancer	HepG2	liver
8	chr12:122683000-122683800	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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