Variant report

Variant	rs12427824
Chromosome Location	chr13:30562849-30562850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11617050	0.84[ASN][1000 genomes]
rs11620467	0.84[ASN][1000 genomes]
rs28366394	0.84[ASN][1000 genomes]
rs4769796	0.88[ASN][1000 genomes]
rs4769797	0.88[ASN][1000 genomes]
rs529547	0.99[ASN][1000 genomes]
rs536937	0.85[ASN][1000 genomes]
rs637375	0.84[ASN][1000 genomes]
rs638330	0.86[ASN][1000 genomes]
rs647790	0.88[ASN][1000 genomes]
rs73159335	0.87[AMR][1000 genomes]
rs73159363	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73159367	0.85[ASN][1000 genomes]
rs7324833	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329842	0.83[ASN][1000 genomes]
rs7333713	0.88[ASN][1000 genomes]
rs860181	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30562600-30563000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:30562600-30564400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:30562800-30564200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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