Variant report

Variant	rs12427962
Chromosome Location	chr13:49366791-49366792
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11617047	0.84[EUR][1000 genomes]
rs11617699	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11618675	1.00[AFR][1000 genomes]
rs12427695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12429225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12430308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28533042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv2758327	chr13:49283983-49472517	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2759936	chr13:49283983-49472517	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832606	chr13:49352212-49506009	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49364400-49366800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:49364400-49366800	Enhancers	Hela-S3	cervix
3	chr13:49364400-49367000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:49364800-49366800	Enhancers	NHDF-Ad	bronchial
5	chr13:49365000-49366800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:49365200-49366800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr13:49365200-49366800	Enhancers	HMEC	breast
8	chr13:49365200-49366800	Enhancers	NH-A	brain
9	chr13:49365200-49366800	Enhancers	NHLF	lung
10	chr13:49365200-49366800	Enhancers	Osteobl	bone
11	chr13:49365600-49366800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:49366000-49366800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr13:49366600-49366800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:49366600-49367000	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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