Variant report

Variant	rs12429739
Chromosome Location	chr13:76863487-76863488
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1164504	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17736683	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202446	0.98[AFR][1000 genomes]
rs73227690	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1044736	chr13:76728655-77066435	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76861200-76867200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr13:76861400-76863600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:76861400-76863600	Weak transcription	HSMMtube	muscle
4	chr13:76861400-76866400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:76861400-76866400	Weak transcription	HSMM	muscle
6	chr13:76861600-76867000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:76862000-76866600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:76862200-76867200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr13:76862600-76864200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:76862600-76864200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr13:76862800-76863600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:76862800-76864000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr13:76862800-76864200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr13:76863000-76864200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:76863400-76864000	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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