Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11149148	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12429730	0.83[AFR][1000 genomes]
rs1335281	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34928706	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4628842	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4885676	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4885677	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7319612	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7333650	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7333880	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7338949	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74099556	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7982512	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7983143	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7984156	0.82[ASW][hapmap]
rs7990168	0.83[AFR][1000 genomes]
rs9530978	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9530979	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9530983	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9545236	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9545242	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9545246	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048990	chr13:80419496-80456454	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv1044254	chr13:80419496-80457686	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80442000-80448600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:80444000-80448800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:80444800-80448600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:80444800-80448600	Weak transcription	Fetal Brain Male	brain
5	chr13:80444800-80448600	Weak transcription	NHEK	skin
6	chr13:80445000-80448600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:80445400-80448600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:80445400-80448800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr13:80445600-80448600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr13:80445600-80448600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:80447000-80449400	Enhancers	Fetal Thymus	thymus
12	chr13:80447400-80448800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr13:80447600-80448600	Weak transcription	Thymus	Thymus

Quick Search: