Variant report

Variant	rs1243199
Chromosome Location	chr10:21950592-21950593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1243181	0.91[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes]
rs1243190	0.95[JPT][hapmap]
rs1243197	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16921849	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1970467	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21896800-21973200	Weak transcription	Hela-S3	cervix
2	chr10:21897400-21960200	Weak transcription	Fetal Brain Male	brain
3	chr10:21908400-21964000	Weak transcription	Colonic Mucosa	Colon
4	chr10:21915200-21954200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:21915200-21983800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:21915400-21967000	Weak transcription	Pancreas	Pancrea
7	chr10:21917200-21967400	Weak transcription	Brain Angular Gyrus	brain
8	chr10:21920000-21965600	Weak transcription	Esophagus	oesophagus
9	chr10:21923800-21983200	Weak transcription	NHLF	lung
10	chr10:21924200-21962400	Weak transcription	HSMM	muscle
11	chr10:21926600-21951200	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:21926800-21951000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:21927000-21951000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:21927000-21955800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:21928600-21951000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:21928600-21988200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:21928800-21951600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:21928800-21957800	Weak transcription	HSMMtube	muscle
19	chr10:21928800-21962400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:21928800-21970200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:21928800-21974400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:21929800-21988000	Weak transcription	HUVEC	blood vessel
23	chr10:21931000-21951000	Weak transcription	Brain Anterior Caudate	brain
24	chr10:21931000-21958800	Weak transcription	GM12878-XiMat	blood
25	chr10:21931400-21954200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:21938600-21975600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:21938600-21993800	Weak transcription	Lung	lung
28	chr10:21938800-21962400	Weak transcription	Aorta	Aorta
29	chr10:21938800-21964400	Weak transcription	Spleen	Spleen
30	chr10:21938800-21969600	Weak transcription	NHEK	skin
31	chr10:21939200-21958800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:21942000-21951600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:21942200-21951000	Weak transcription	A549	lung
34	chr10:21942200-21954400	Weak transcription	Placenta	Placenta
35	chr10:21942200-21962200	Weak transcription	Liver	Liver
36	chr10:21942400-21951400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:21942400-21952400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:21942400-21954400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:21942400-21954400	Weak transcription	Fetal Intestine Large	intestine
40	chr10:21942400-21959400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:21942400-21961800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr10:21942400-21962400	Weak transcription	NHDF-Ad	bronchial
43	chr10:21942400-21962400	Weak transcription	Osteobl	bone
44	chr10:21942400-21970000	Weak transcription	HMEC	breast
45	chr10:21942400-21976200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr10:21942400-21977400	Weak transcription	Adipose Nuclei	Adipose
47	chr10:21942400-21987200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:21942600-21962200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:21942600-21962400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:21942600-22004000	Weak transcription	NH-A	brain

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