Variant report

Variant	rs12432433
Chromosome Location	chr14:65279494-65279495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65277232..65280033-chr14:65282761..65285500,2	K562	blood:
2	chr14:65272282..65274917-chr14:65276747..65279585,3	MCF-7	breast:
3	chr14:65277012..65279829-chr14:65281004..65282816,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12433436	1.00[AMR][1000 genomes]
rs34652654	1.00[AFR][1000 genomes]
rs3742601	1.00[AMR][1000 genomes]
rs3742602	1.00[AMR][1000 genomes]
rs3819920	1.00[ASN][1000 genomes]
rs59809348	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516768	chr14:65277890-65279944	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv521286	chr14:65277890-65281944	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65254000-65282600	Weak transcription	Spleen	Spleen
2	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:65273800-65287200	Weak transcription	K562	blood
6	chr14:65274600-65284600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:65275000-65281800	Weak transcription	Right Ventricle	heart
8	chr14:65275800-65290000	Weak transcription	Psoas Muscle	Psoas
9	chr14:65278000-65279600	Enhancers	Hela-S3	cervix
10	chr14:65278400-65279600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr14:65278400-65280800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr14:65278800-65279600	Enhancers	Left Ventricle	heart
13	chr14:65279000-65279600	Enhancers	Primary B cells from peripheral blood	blood
14	chr14:65279000-65279600	Enhancers	Fetal Thymus	thymus
15	chr14:65279000-65279600	Enhancers	GM12878-XiMat	blood
16	chr14:65279000-65280200	Enhancers	Fetal Muscle Leg	muscle
17	chr14:65279000-65280800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr14:65279200-65279600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr14:65279200-65279600	Enhancers	Fetal Heart	heart
20	chr14:65279200-65281000	Weak transcription	A549	lung
21	chr14:65279400-65279600	Enhancers	Thymus	Thymus
22	chr14:65279400-65282200	Weak transcription	Right Atrium	heart
23	chr14:65279400-65284200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr14:65279400-65284400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:65279400-65284400	Weak transcription	Aorta	Aorta
26	chr14:65279400-65284600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:65279400-65287000	Weak transcription	H9 Cell Line	embryonic stem cell

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