Variant report

Variant	rs12433031
Chromosome Location	chr14:83187089-83187090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12432336	0.94[ASN][1000 genomes]
rs12433540	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28411241	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28470955	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054303	chr14:83018016-83258920	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2751286	chr14:83066038-83203657	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv902124	chr14:83165520-83282163	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv565331	chr14:83176692-83228383	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:83186000-83187400	Enhancers	Stomach Smooth Muscle	stomach
2	chr14:83186600-83187800	Enhancers	Aorta	Aorta
3	chr14:83186800-83187200	Enhancers	Gastric	stomach
4	chr14:83186800-83187200	Enhancers	Lung	lung
5	chr14:83186800-83187200	Enhancers	NHDF-Ad	bronchial
6	chr14:83186800-83187600	Enhancers	Colon Smooth Muscle	Colon
7	chr14:83186800-83187600	Enhancers	Esophagus	oesophagus
8	chr14:83186800-83187600	Enhancers	Fetal Muscle Leg	muscle
9	chr14:83186800-83187600	Enhancers	Rectal Smooth Muscle	rectum
10	chr14:83186800-83187800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr14:83187000-83187200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:83187000-83187800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr14:83187000-83187800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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