Variant report

Variant	rs12435342
Chromosome Location	chr14:40203863-40203864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12433333	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12434367	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12435520	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12587054	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109729	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17109781	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17109783	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17109789	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1953185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56245923	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62016706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62016708	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62016709	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62016723	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046932	chr14:40132136-40268085	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1047288	chr14:40143177-40275545	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv901659	chr14:40190919-40282862	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832776	chr14:40203172-40342229	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40203000-40204200	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr14:40203200-40204400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr14:40203400-40204200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:40203800-40204200	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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