Variant report

Variant	rs12437622
Chromosome Location	chr15:92399594-92399595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92399066..92399852-chr15:92525323..92526129,3	MCF-7	breast:
2	chr15:92399350..92399861-chr15:92620433..92621256,2	MCF-7	breast:
3	chr15:92398900..92399766-chr15:92625069..92626058,4	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12441552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162027	0.86[ASN][1000 genomes]
rs7169208	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92396000-92399800	Active TSS	Brain Angular Gyrus	brain
2	chr15:92396000-92399800	Active TSS	Brain Anterior Caudate	brain
3	chr15:92396200-92400400	Active TSS	Fetal Brain Female	brain
4	chr15:92397600-92399600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr15:92397600-92400200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr15:92397600-92401200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr15:92397800-92399600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:92397800-92399800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:92398000-92399600	Weak transcription	Pancreas	Pancrea
10	chr15:92398000-92399800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr15:92398000-92401200	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr15:92398000-92408000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:92398000-92408400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr15:92398000-92408800	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:92398000-92410000	Weak transcription	Gastric	stomach
16	chr15:92398200-92399800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:92398200-92400400	Weak transcription	Psoas Muscle	Psoas
18	chr15:92398200-92401400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:92398200-92401400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr15:92398200-92406400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:92398400-92400200	Weak transcription	Small Intestine	intestine
22	chr15:92398400-92400600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr15:92398400-92402200	Enhancers	Fetal Brain Male	brain
24	chr15:92398400-92405000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:92398600-92399600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:92398600-92399600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:92398600-92400600	Enhancers	Lung	lung
28	chr15:92398600-92400800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr15:92398600-92401800	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr15:92398600-92402200	Enhancers	Primary hematopoietic stem cells	blood
31	chr15:92398600-92402400	Enhancers	Primary T cells fromperipheralblood	blood
32	chr15:92398600-92402400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:92398600-92402800	Weak transcription	NHLF	lung
34	chr15:92398600-92403200	Weak transcription	Osteobl	bone
35	chr15:92398800-92399600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:92398800-92400000	Enhancers	HMEC	breast
37	chr15:92398800-92400200	Enhancers	Stomach Smooth Muscle	stomach
38	chr15:92398800-92400400	Flanking Active TSS	Fetal Heart	heart
39	chr15:92398800-92400600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr15:92398800-92400600	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr15:92398800-92400600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:92398800-92400600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr15:92398800-92400800	Enhancers	Primary T cells from cord blood	blood
44	chr15:92398800-92402200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:92398800-92402600	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr15:92398800-92413400	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr15:92399000-92400200	Bivalent Enhancer	Primary B cells from cord blood	blood
48	chr15:92399000-92400800	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr15:92399000-92407200	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr15:92399200-92399600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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