Variant report

Variant	rs12437988
Chromosome Location	chr15:74829821-74829822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:74829806-74830021	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr15:74829609-74829979	K562	blood:	n/a	n/a
3	POLR2A	chr15:74829648-74829849	HepG2	liver:	n/a	n/a
4	POLR2A	chr15:74829166-74830845	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74823864..74826848-chr15:74827847..74829990,2	MCF-7	breast:
2	chr15:74822266..74825721-chr15:74827870..74831013,4	K562	blood:
3	chr15:74823237..74825654-chr15:74828712..74830605,2	K562	blood:
4	chr15:74827578..74829984-chr15:74833096..74835637,4	MCF-7	breast:
5	chr15:74827938..74830283-chr15:74836059..74838553,2	K562	blood:
6	chr15:74668521..74670719-chr15:74827986..74829879,2	K562	blood:
7	chr15:74822467..74830075-chr15:74830932..74835759,12	MCF-7	breast:

No data

Variant related genes	Relation type
ARID3B	TF binding region
ENSG00000179361	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1030888	0.81[AMR][1000 genomes]
rs11543198	0.92[AMR][1000 genomes]
rs12443108	0.92[AMR][1000 genomes]
rs8041357	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74818200-74832400	Weak transcription	Pancreas	Pancrea
2	chr15:74822000-74832600	Weak transcription	Aorta	Aorta
3	chr15:74824000-74832000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:74824000-74832400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:74824000-74832400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:74824200-74832600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:74824400-74831800	Weak transcription	NHLF	lung
8	chr15:74824400-74832200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:74824400-74832400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:74824600-74832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:74824600-74832200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:74824600-74832400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:74824800-74831600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:74824800-74832000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr15:74828000-74831800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:74828000-74832200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr15:74828200-74831600	Weak transcription	GM12878-XiMat	blood
18	chr15:74828200-74832200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:74828200-74832200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:74828200-74832400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:74828200-74832400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:74828400-74831800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:74828400-74832000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:74828400-74832400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:74828600-74832400	Weak transcription	NH-A	brain
26	chr15:74828600-74832400	Weak transcription	Osteobl	bone
27	chr15:74828800-74831800	Weak transcription	HMEC	breast
28	chr15:74828800-74832000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:74828800-74832200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:74828800-74832200	Weak transcription	K562	blood
31	chr15:74828800-74832400	Weak transcription	Primary T cells from cord blood	blood
32	chr15:74829000-74831800	Weak transcription	Hela-S3	cervix
33	chr15:74829000-74832000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:74829000-74832000	Weak transcription	NHEK	skin
35	chr15:74829200-74831600	Weak transcription	Fetal Thymus	thymus
36	chr15:74829600-74830000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr15:74829600-74831800	Weak transcription	Fetal Stomach	stomach
38	chr15:74829800-74830400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:74829800-74830600	Enhancers	HUES6 Cell Line	embryonic stem cell

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