Variant report

Variant	rs12439655
Chromosome Location	chr15:75406341-75406342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75405088..75407275-chr15:75491436..75494556,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11072527	0.89[EUR][1000 genomes]
rs12441216	0.86[EUR][1000 genomes]
rs12595327	0.89[EUR][1000 genomes]
rs1602361	0.89[EUR][1000 genomes]
rs4886665	0.89[EUR][1000 genomes]
rs59916619	1.00[EUR][1000 genomes]
rs9672424	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75397600-75406800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:75397600-75415800	Weak transcription	Ovary	ovary
3	chr15:75401200-75430600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:75401800-75408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:75402400-75406600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:75402400-75406600	Weak transcription	Lung	lung
7	chr15:75402600-75406600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:75403600-75406600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr15:75403800-75406600	Weak transcription	Spleen	Spleen
10	chr15:75405200-75407000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:75405400-75406800	Weak transcription	HepG2	liver
12	chr15:75405400-75407200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr15:75405400-75407400	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr15:75405400-75407400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
15	chr15:75405400-75408000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:75405600-75406600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr15:75405600-75406800	Weak transcription	Hela-S3	cervix
18	chr15:75405800-75407400	ZNF genes & repeats	GM12878-XiMat	blood
19	chr15:75405800-75407600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
20	chr15:75406000-75406400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:75406000-75406400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:75406200-75407400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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