Variant report

Variant	rs12441202
Chromosome Location	chr15:56619799-56619800
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12438014	0.86[AMR][1000 genomes]
rs12438053	0.93[AMR][1000 genomes]
rs12438761	0.93[AMR][1000 genomes]
rs12438788	0.86[AMR][1000 genomes]
rs12439039	0.93[AMR][1000 genomes]
rs12439083	0.93[AMR][1000 genomes]
rs12439088	0.93[AMR][1000 genomes]
rs12439453	0.86[AMR][1000 genomes]
rs12439999	0.93[AMR][1000 genomes]
rs12440764	0.86[AMR][1000 genomes]
rs12440913	0.93[AMR][1000 genomes]
rs12441000	0.93[AMR][1000 genomes]
rs12441143	0.93[AMR][1000 genomes]
rs12441149	0.93[AMR][1000 genomes]
rs12441707	0.93[AMR][1000 genomes]
rs12442236	0.86[AMR][1000 genomes]
rs12442599	0.93[AMR][1000 genomes]
rs12442602	0.93[AMR][1000 genomes]
rs12442951	0.93[AMR][1000 genomes]
rs12443204	0.93[AMR][1000 genomes]
rs12443459	0.93[AMR][1000 genomes]
rs17238663	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56613400-56623400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:56614600-56619800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:56619400-56621400	Enhancers	Placenta	Placenta
4	chr15:56619600-56619800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:56619600-56620000	Flanking Active TSS	HMEC	breast
6	chr15:56619600-56620400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:56619600-56620400	Flanking Active TSS	NHEK	skin
8	chr15:56619600-56620800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr15:56619600-56621200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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