Variant report

Variant	rs12441758
Chromosome Location	chr15:75211310-75211311
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75167340..75169926-chr15:75209940..75212819,2	K562	blood:
2	chr15:75210105..75212833-chr15:75214992..75217105,2	K562	blood:
3	chr15:75210426..75213159-chr15:75229718..75232065,4	K562	blood:
4	chr15:75210535..75212443-chr15:75223416..75224933,2	MCF-7	breast:
5	chr15:75210612..75213940-chr15:75219994..75223601,6	K562	blood:
6	chr15:75190074..75192839-chr15:75211029..75213890,2	K562	blood:
7	chr15:75182811..75184655-chr15:75210487..75213459,2	K562	blood:

Variant related genes	Relation type
ENSG00000178802	Chromatin interaction
ENSG00000260824	Chromatin interaction
ENSG00000178741	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12437831	0.93[AMR][1000 genomes]
rs12440159	0.93[AMR][1000 genomes]
rs4886624	1.00[AFR][1000 genomes]
rs4886635	0.93[AMR][1000 genomes]
rs57498691	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75199600-75229400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:75199800-75219600	Weak transcription	Aorta	Aorta
3	chr15:75200000-75211600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:75200000-75221000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:75200000-75224000	Weak transcription	Stomach Mucosa	stomach
6	chr15:75200400-75211400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:75200400-75211400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:75200400-75221200	Weak transcription	Fetal Heart	heart
9	chr15:75201000-75213000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:75201000-75224600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:75202000-75224400	Strong transcription	Fetal Muscle Trunk	muscle
12	chr15:75202200-75211800	Strong transcription	Fetal Intestine Small	intestine
13	chr15:75202200-75212000	Strong transcription	Fetal Stomach	stomach
14	chr15:75202200-75212200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:75202200-75224400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:75202600-75224800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr15:75202600-75225000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr15:75203000-75212600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:75203000-75224400	Strong transcription	Fetal Muscle Leg	muscle
20	chr15:75203000-75224600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr15:75203200-75212800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr15:75203200-75222200	Strong transcription	Left Ventricle	heart
23	chr15:75203400-75218000	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr15:75203800-75223000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:75203800-75224200	Strong transcription	Duodenum Mucosa	Duodenum
26	chr15:75203800-75224400	Strong transcription	Fetal Intestine Large	intestine
27	chr15:75203800-75224600	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:75204000-75211800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:75204000-75212600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:75204000-75216600	Strong transcription	Thymus	Thymus
31	chr15:75204000-75217600	Strong transcription	Lung	lung
32	chr15:75204000-75220600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr15:75204000-75221800	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:75204000-75222200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:75204000-75222400	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr15:75204000-75224200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:75204000-75224200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:75204000-75224400	Strong transcription	Placenta	Placenta
39	chr15:75204000-75224600	Strong transcription	Liver	Liver
40	chr15:75204000-75224600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr15:75204000-75224800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:75204000-75224800	Strong transcription	Fetal Thymus	thymus
43	chr15:75204000-75228400	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr15:75204200-75224200	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:75204400-75224600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr15:75204600-75229200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr15:75205400-75213000	Strong transcription	Rectal Smooth Muscle	rectum
48	chr15:75205400-75216600	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr15:75205600-75213200	Strong transcription	Brain Anterior Caudate	brain
50	chr15:75205600-75222000	Strong transcription	Primary neutrophils fromperipheralblood	blood

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