Variant report

Variant	rs12441854
Chromosome Location	chr15:72633931-72633932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72632888..72635119-chr15:72977759..72979654,2	MCF-7	breast:
2	chr15:72605042..72606993-chr15:72631324..72635097,3	MCF-7	breast:
3	chr15:72633286..72635999-chr15:72640921..72642721,3	K562	blood:
4	chr15:72521137..72522908-chr15:72633930..72635737,2	MCF-7	breast:
5	chr15:72604677..72605633-chr15:72633436..72634409,7	MCF-7	breast:
6	chr15:72633335..72635089-chr15:72648050..72650924,2	K562	blood:
7	chr15:72604728..72605627-chr15:72633426..72634362,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067225	Chromatin interaction
ENSG00000175202	Chromatin interaction
ENSG00000140463	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1800431	0.91[AMR][1000 genomes]
rs2912214	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2912216	0.85[AMR][1000 genomes]
rs2912217	0.91[AMR][1000 genomes]
rs2959909	0.91[AMR][1000 genomes]
rs2959911	0.91[AMR][1000 genomes]
rs4265763	0.91[AMR][1000 genomes]
rs4777502	0.91[AMR][1000 genomes]
rs8037749	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613000-72636000	Weak transcription	Right Ventricle	heart
2	chr15:72613000-72636400	Weak transcription	Gastric	stomach
3	chr15:72613000-72637000	Weak transcription	Colonic Mucosa	Colon
4	chr15:72613200-72634200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:72613200-72635600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:72613200-72635800	Weak transcription	Pancreas	Pancrea
7	chr15:72613200-72636000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:72613200-72636200	Weak transcription	HSMMtube	muscle
9	chr15:72613200-72651000	Weak transcription	Stomach Mucosa	stomach
10	chr15:72613200-72666800	Weak transcription	Fetal Heart	heart
11	chr15:72613400-72634000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr15:72613400-72634000	Weak transcription	Spleen	Spleen
13	chr15:72613400-72634400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:72613400-72635800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr15:72613400-72636600	Weak transcription	HSMM	muscle
16	chr15:72613400-72638000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr15:72613800-72634000	Weak transcription	Fetal Brain Female	brain
19	chr15:72613800-72636400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:72614000-72636200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:72614000-72636400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:72614000-72642400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:72618800-72636800	Weak transcription	Fetal Kidney	kidney
24	chr15:72619600-72634000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:72619600-72635800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:72619600-72636200	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:72619800-72634000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:72619800-72634200	Weak transcription	Placenta	Placenta
29	chr15:72619800-72634800	Weak transcription	Brain Germinal Matrix	brain
30	chr15:72619800-72635600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:72619800-72636200	Weak transcription	Brain Substantia Nigra	brain
32	chr15:72619800-72637600	Weak transcription	Psoas Muscle	Psoas
33	chr15:72620000-72634400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr15:72620000-72634600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr15:72622200-72636800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:72624200-72635800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr15:72625400-72636800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr15:72627800-72635800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr15:72627800-72650400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:72629000-72636800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:72629200-72649600	Strong transcription	Left Ventricle	heart
42	chr15:72629800-72649200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:72630000-72649200	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr15:72630200-72634200	Enhancers	Fetal Lung	lung
45	chr15:72630200-72634600	Strong transcription	Primary T cells from cord blood	blood
46	chr15:72630200-72636200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:72630200-72656200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr15:72630400-72635800	Weak transcription	Brain Anterior Caudate	brain
49	chr15:72631000-72636200	Weak transcription	Esophagus	oesophagus
50	chr15:72631000-72641400	Weak transcription	Fetal Brain Male	brain

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