Variant report

Variant	rs12441881
Chromosome Location	chr15:75448882-75448883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75446676..75449374-chr15:75464982..75466501,2	MCF-7	breast:
2	chr15:75447167..75449723-chr15:75491839..75495172,3	MCF-7	breast:
3	chr15:75448189..75450812-chr15:75493257..75496256,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11072527	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12441216	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12595327	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1602361	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2304899	0.80[MEX][hapmap]
rs4886651	0.80[MEX][hapmap]
rs4886665	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75443800-75449400	Enhancers	Spleen	Spleen
2	chr15:75444000-75449000	Weak transcription	Lung	lung
3	chr15:75446000-75449600	Enhancers	GM12878-XiMat	blood
4	chr15:75446200-75449000	Weak transcription	A549	lung
5	chr15:75446400-75452000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:75446400-75453400	Weak transcription	Right Atrium	heart
7	chr15:75446600-75451200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:75446800-75451600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr15:75447000-75449600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:75447400-75452000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr15:75447600-75449000	Weak transcription	Stomach Mucosa	stomach
12	chr15:75447800-75450200	Weak transcription	Primary B cells from cord blood	blood
13	chr15:75448000-75450000	Enhancers	Pancreas	Pancrea
14	chr15:75448000-75452000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr15:75448000-75453400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:75448400-75450400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr15:75448600-75449200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:75448600-75449200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr15:75448600-75450000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:75448800-75449000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
21	chr15:75448800-75449000	Flanking Active TSS	Hela-S3	cervix
22	chr15:75448800-75449400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:75448800-75449400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:75448800-75449400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr15:75448800-75449400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:75448800-75449600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr15:75448800-75449600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr15:75448800-75449800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr15:75448800-75450000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:75448800-75450800	Enhancers	HepG2	liver

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