Variant report

Variant	rs12446101
Chromosome Location	chr16:12260965-12260966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:12260496..12262911-chr16:12270695..12272888,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11642364	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11642867	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11643843	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11644280	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11644612	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11646544	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11647545	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11647857	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12444353	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12445236	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12447822	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1472979	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1809989	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3844114	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4781189	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4781190	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4781191	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4781192	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4781194	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4781195	0.92[ASN][1000 genomes]
rs4781196	0.93[ASN][1000 genomes]
rs55939888	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6498269	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6498270	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67401564	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7192589	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7193992	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7193997	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7197299	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7206824	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73504103	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73521875	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8046606	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs830717	0.86[CHB][hapmap]
rs9788826	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9788917	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043096	chr16:12013915-12840769	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1043959	chr16:12039346-12285269	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1052973	chr16:12188092-12307880	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1039590	chr16:12237623-12279574	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12231400-12268000	Weak transcription	Pancreas	Pancrea
2	chr16:12234600-12261600	Weak transcription	Aorta	Aorta
3	chr16:12234600-12265600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr16:12242200-12261600	Weak transcription	Lung	lung
5	chr16:12242200-12262800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr16:12242200-12299400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr16:12242400-12264600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr16:12242400-12280600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr16:12244800-12261200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr16:12245600-12261800	Weak transcription	Fetal Thymus	thymus
11	chr16:12251800-12261600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr16:12251800-12264000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr16:12252000-12264200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr16:12253200-12264000	Weak transcription	Esophagus	oesophagus
15	chr16:12253400-12262200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr16:12253400-12264200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr16:12253400-12267800	Weak transcription	Brain Hippocampus Middle	brain
18	chr16:12253400-12268000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr16:12254000-12261600	Weak transcription	Adipose Nuclei	Adipose
20	chr16:12254000-12263600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr16:12254200-12268200	Weak transcription	Brain Anterior Caudate	brain
22	chr16:12254200-12272000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr16:12254200-12277600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr16:12254600-12263800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr16:12254800-12264000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr16:12255200-12261200	Weak transcription	NHEK	skin
27	chr16:12255400-12262000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr16:12255400-12262000	Weak transcription	HSMM	muscle
29	chr16:12255800-12261600	Weak transcription	Spleen	Spleen
30	chr16:12256400-12261000	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr16:12256600-12262200	Weak transcription	Left Ventricle	heart
32	chr16:12256800-12261000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr16:12256800-12261800	Weak transcription	HSMMtube	muscle
34	chr16:12256800-12262000	Weak transcription	Right Ventricle	heart
35	chr16:12256800-12263600	Weak transcription	Fetal Muscle Leg	muscle
36	chr16:12256800-12264000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr16:12256800-12264000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr16:12256800-12264400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr16:12256800-12264400	Weak transcription	NHLF	lung
40	chr16:12256800-12268000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr16:12256800-12268000	Weak transcription	Gastric	stomach
42	chr16:12257000-12262000	Weak transcription	Fetal Heart	heart
43	chr16:12257000-12264600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr16:12257000-12296800	Weak transcription	Thymus	Thymus
45	chr16:12257200-12264200	Weak transcription	Fetal Lung	lung
46	chr16:12257400-12261600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr16:12257400-12261800	Weak transcription	Placenta	Placenta
48	chr16:12257600-12261600	Weak transcription	Fetal Stomach	stomach
49	chr16:12257600-12262000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr16:12257800-12261600	Weak transcription	Fetal Brain Male	brain

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