Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11587867	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1244997	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1245000	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1245002	0.92[ASN][1000 genomes]
rs1245003	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1245004	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1245005	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1245007	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1245009	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1245010	0.89[ASN][1000 genomes]
rs1261868	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1261869	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1272551	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1764593	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1764594	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1764595	0.95[ASN][1000 genomes]
rs1764596	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1779664	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1779665	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2799959	0.84[ASN][1000 genomes]
rs4359011	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4359012	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4375235	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4596850	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9429920	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs945676	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873168	chr1:214962771-215064388	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215021600-215027400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:215021600-215031200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:215024200-215027600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:215025400-215035200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: